Base Package:
mingw-w64-samtools

Description:
tools for manipulating next-generation sequencing data
Group(s):
-
Repo:
clang64
Homepage:
http://www.htslib.org/
License(s):
custom
Version:
1.18-1
GIT Version:
1.18-1
AUR:
1.18

Installation:
pacman -S mingw-w64-clang-x86_64-samtools
File:
https://mirror.msys2.org/mingw/clang64/mingw-w64-clang-x86_64-samtools-1.18-1-any.pkg.tar.zst
SHA256:
56c9d03854b4ac2234f177834eba037f956edd3eb88e3495da9d727fd421d082
Last Packager:
CI (msys2/msys2-autobuild/1f1fabad/5845670968)
Build Date:
2023-08-13 07:07:56
Package Size:
0.53 MB
Installed Size:
1.45 MB

Dependencies:
Optional Dependencies:
-
Build Dependencies:
Check Dependencies:
-
Provides:
-
Conflicts:
-
Replaces:
-

Provided By:
-
Required By:
-

Files:
/clang64/bin/ace2sam.exe
/clang64/bin/blast2sam.pl
/clang64/bin/bowtie2sam.pl
/clang64/bin/export2sam.pl
/clang64/bin/fasta-sanitize.pl
/clang64/bin/interpolate_sam.pl
/clang64/bin/maq2sam-long.exe
/clang64/bin/maq2sam-short.exe
/clang64/bin/md5fa.exe
/clang64/bin/md5sum-lite.exe
/clang64/bin/novo2sam.pl
/clang64/bin/plot-ampliconstats
/clang64/bin/plot-bamstats
/clang64/bin/psl2sam.pl
/clang64/bin/sam2vcf.pl
/clang64/bin/samtools.exe
/clang64/bin/samtools.pl
/clang64/bin/seq_cache_populate.pl
/clang64/bin/soap2sam.pl
/clang64/bin/wgsim.exe
/clang64/bin/wgsim_eval.pl
/clang64/bin/zoom2sam.pl
/clang64/include/bam/bam.h
/clang64/include/bam/bam2bcf.h
/clang64/include/bam/bam_ampliconclip.h
/clang64/include/bam/bam_lpileup.h
/clang64/include/bam/bam_plbuf.h
/clang64/include/bam/bam_tview.h
/clang64/include/bam/bedidx.h
/clang64/include/bam/config.h
/clang64/include/bam/consensus_pileup.h
/clang64/include/bam/sam_opts.h
/clang64/include/bam/sam_utils.h
/clang64/include/bam/sample.h
/clang64/include/bam/samtools.h
/clang64/include/bam/splaysort.h
/clang64/include/bam/stats_isize.h
/clang64/include/bam/tmp_file.h
/clang64/include/bam/version.h
/clang64/share/licenses/samtools/LICENSE
/clang64/share/man/man1/samtools-addreplacerg.1.gz
/clang64/share/man/man1/samtools-ampliconclip.1.gz
/clang64/share/man/man1/samtools-ampliconstats.1.gz
/clang64/share/man/man1/samtools-bedcov.1.gz
/clang64/share/man/man1/samtools-calmd.1.gz
/clang64/share/man/man1/samtools-cat.1.gz
/clang64/share/man/man1/samtools-collate.1.gz
/clang64/share/man/man1/samtools-consensus.1.gz
/clang64/share/man/man1/samtools-coverage.1.gz
/clang64/share/man/man1/samtools-cram-size.1.gz
/clang64/share/man/man1/samtools-depad.1.gz
/clang64/share/man/man1/samtools-depth.1.gz
/clang64/share/man/man1/samtools-dict.1.gz
/clang64/share/man/man1/samtools-faidx.1.gz
/clang64/share/man/man1/samtools-fasta.1.gz
/clang64/share/man/man1/samtools-fastq.1.gz
/clang64/share/man/man1/samtools-fixmate.1.gz
/clang64/share/man/man1/samtools-flags.1.gz
/clang64/share/man/man1/samtools-flagstat.1.gz
/clang64/share/man/man1/samtools-fqidx.1.gz
/clang64/share/man/man1/samtools-head.1.gz
/clang64/share/man/man1/samtools-idxstats.1.gz
/clang64/share/man/man1/samtools-import.1.gz
/clang64/share/man/man1/samtools-index.1.gz
/clang64/share/man/man1/samtools-markdup.1.gz
/clang64/share/man/man1/samtools-merge.1.gz
/clang64/share/man/man1/samtools-mpileup.1.gz
/clang64/share/man/man1/samtools-phase.1.gz
/clang64/share/man/man1/samtools-quickcheck.1.gz
/clang64/share/man/man1/samtools-reference.1.gz
/clang64/share/man/man1/samtools-reheader.1.gz
/clang64/share/man/man1/samtools-reset.1.gz
/clang64/share/man/man1/samtools-rmdup.1.gz
/clang64/share/man/man1/samtools-samples.1.gz
/clang64/share/man/man1/samtools-sort.1.gz
/clang64/share/man/man1/samtools-split.1.gz
/clang64/share/man/man1/samtools-stats.1.gz
/clang64/share/man/man1/samtools-targetcut.1.gz
/clang64/share/man/man1/samtools-tview.1.gz
/clang64/share/man/man1/samtools-view.1.gz
/clang64/share/man/man1/samtools.1.gz
/clang64/share/man/man1/wgsim.1.gz
Last Update: 2023-12-03 14:27:33 [Request update]