Package: mingw-w64-clang-x86_64-htslib

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Base Package:

mingw-w64-htslib

Description:

library for high-throughput sequencing data formats (mingw-w64)

Group(s):

Repo:

clang64

Homepage:

https://www.htslib.org/

Repository:

https://github.com/samtools/htslib

License(s):

MIT

Version:

1.23-2

External:

Anitya: htslib
AUR: 1.23.1
Gentoo: 1.23
Repology: htslib

Vulnerabilities:

CVE-2026-31967 (critical)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31966 (critical)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31971 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31970 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31969 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31968 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31965 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31964 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)
CVE-2026-31963 (high)
(fixed in 1.21.1)
CVE-2026-31962 (high)
(fixed in 1.21.1, 1.22.2, 1.23.1)

Installation:

pacman -S mingw-w64-clang-x86_64-htslib

File:

https://mirror.msys2.org/mingw/clang64/mingw-w64-clang-x86_64-htslib-1.23-2-any.pkg.tar.zst

SHA256:

8fb6496e8d7879d2f7e48a401dc1e15aeec0bbfb44d562fb35a729f36e3f72e9

Last Packager:

CI (msys2/msys2-autobuild/b47c6b7a/21471117473)

Build Date:

2026-01-29 11:30:30

Package Size:

1.04 MB

Installed Size:

7.17 MB

Source-Only Tarball:

https://mirror.msys2.org/mingw/sources/mingw-w64-htslib-1.23-2.src.tar.zst

Dependencies:

Optional Dependencies:

Build Dependencies:

Check Dependencies:

Provides:

Conflicts:

Replaces:

Provided By:

Required By:

Files:

/clang64/bin/annot-tsv.exe
/clang64/bin/bgzip.exe
/clang64/bin/hts-3.dll
/clang64/bin/htsfile.exe
/clang64/bin/tabix.exe
/clang64/include/htslib/bgzf.h
/clang64/include/htslib/cram.h
/clang64/include/htslib/faidx.h
/clang64/include/htslib/hfile.h
/clang64/include/htslib/hts.h
/clang64/include/htslib/hts_defs.h
/clang64/include/htslib/hts_endian.h
/clang64/include/htslib/hts_expr.h
/clang64/include/htslib/hts_log.h
/clang64/include/htslib/hts_os.h
/clang64/include/htslib/kbitset.h
/clang64/include/htslib/kfunc.h
/clang64/include/htslib/khash.h
/clang64/include/htslib/khash_str2int.h
/clang64/include/htslib/klist.h
/clang64/include/htslib/knetfile.h
/clang64/include/htslib/kroundup.h
/clang64/include/htslib/kseq.h
/clang64/include/htslib/ksort.h
/clang64/include/htslib/kstring.h
/clang64/include/htslib/regidx.h
/clang64/include/htslib/sam.h
/clang64/include/htslib/synced_bcf_reader.h
/clang64/include/htslib/tbx.h
/clang64/include/htslib/thread_pool.h
/clang64/include/htslib/vcf.h
/clang64/include/htslib/vcf_sweep.h
/clang64/include/htslib/vcfutils.h
/clang64/lib/libhts.a
/clang64/lib/libhts.dll.a
/clang64/lib/pkgconfig/htslib.pc
/clang64/share/licenses/htslib/LICENSE
/clang64/share/man/man1/annot-tsv.1.gz
/clang64/share/man/man1/bgzip.1.gz
/clang64/share/man/man1/htsfile.1.gz
/clang64/share/man/man1/tabix.1.gz
/clang64/share/man/man5/faidx.5.gz
/clang64/share/man/man5/sam.5.gz
/clang64/share/man/man5/vcf.5.gz
/clang64/share/man/man7/htslib-s3-plugin.7.gz