Package: mingw-w64-ucrt-x86_64-samtools

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Base Package:

mingw-w64-samtools

Description:

tools for manipulating next-generation sequencing data

Group(s):

Repo:

ucrt64

Homepage:

http://www.htslib.org/

License(s):

custom

Version:

1.21-1

External:

Anitya: samtools
AUR: 1.21
Gentoo: 1.20
Repology: samtools

Installation:

pacman -S mingw-w64-ucrt-x86_64-samtools

File:

https://mirror.msys2.org/mingw/ucrt64/mingw-w64-ucrt-x86_64-samtools-1.21-1-any.pkg.tar.zst

SHA256:

b797bf60a733509138f8d2620e02309f87dc9f8e8b2d8b1fad2221b0ff46e837

Last Packager:

CI (msys2/msys2-autobuild/22f1e5ad/10851454956)

Build Date:

2024-09-13 15:48:42

Package Size:

0.55 MB

Installed Size:

1.51 MB

Source-Only Tarball:

https://mirror.msys2.org/mingw/sources/mingw-w64-samtools-1.21-1.src.tar.zst

Dependencies:

Optional Dependencies:

Build Dependencies:

Check Dependencies:

Provides:

Conflicts:

Replaces:

Provided By:

Required By:

Files:

/ucrt64/bin/ace2sam.exe
/ucrt64/bin/blast2sam.pl
/ucrt64/bin/bowtie2sam.pl
/ucrt64/bin/export2sam.pl
/ucrt64/bin/fasta-sanitize.pl
/ucrt64/bin/interpolate_sam.pl
/ucrt64/bin/maq2sam-long.exe
/ucrt64/bin/maq2sam-short.exe
/ucrt64/bin/md5fa.exe
/ucrt64/bin/md5sum-lite.exe
/ucrt64/bin/novo2sam.pl
/ucrt64/bin/plot-ampliconstats
/ucrt64/bin/plot-bamstats
/ucrt64/bin/psl2sam.pl
/ucrt64/bin/sam2vcf.pl
/ucrt64/bin/samtools.exe
/ucrt64/bin/samtools.pl
/ucrt64/bin/seq_cache_populate.pl
/ucrt64/bin/soap2sam.pl
/ucrt64/bin/wgsim.exe
/ucrt64/bin/wgsim_eval.pl
/ucrt64/bin/zoom2sam.pl
/ucrt64/include/bam/bam.h
/ucrt64/include/bam/bam2bcf.h
/ucrt64/include/bam/bam_ampliconclip.h
/ucrt64/include/bam/bam_lpileup.h
/ucrt64/include/bam/bam_plbuf.h
/ucrt64/include/bam/bam_tview.h
/ucrt64/include/bam/bedidx.h
/ucrt64/include/bam/config.h
/ucrt64/include/bam/consensus_pileup.h
/ucrt64/include/bam/sam_opts.h
/ucrt64/include/bam/sam_utils.h
/ucrt64/include/bam/sample.h
/ucrt64/include/bam/samtools.h
/ucrt64/include/bam/splaysort.h
/ucrt64/include/bam/stats_isize.h
/ucrt64/include/bam/tmp_file.h
/ucrt64/include/bam/version.h
/ucrt64/share/licenses/samtools/LICENSE
/ucrt64/share/man/man1/samtools-addreplacerg.1.gz
/ucrt64/share/man/man1/samtools-ampliconclip.1.gz
/ucrt64/share/man/man1/samtools-ampliconstats.1.gz
/ucrt64/share/man/man1/samtools-bedcov.1.gz
/ucrt64/share/man/man1/samtools-calmd.1.gz
/ucrt64/share/man/man1/samtools-cat.1.gz
/ucrt64/share/man/man1/samtools-collate.1.gz
/ucrt64/share/man/man1/samtools-consensus.1.gz
/ucrt64/share/man/man1/samtools-coverage.1.gz
/ucrt64/share/man/man1/samtools-cram-size.1.gz
/ucrt64/share/man/man1/samtools-depad.1.gz
/ucrt64/share/man/man1/samtools-depth.1.gz
/ucrt64/share/man/man1/samtools-dict.1.gz
/ucrt64/share/man/man1/samtools-faidx.1.gz
/ucrt64/share/man/man1/samtools-fasta.1.gz
/ucrt64/share/man/man1/samtools-fastq.1.gz
/ucrt64/share/man/man1/samtools-fixmate.1.gz
/ucrt64/share/man/man1/samtools-flags.1.gz
/ucrt64/share/man/man1/samtools-flagstat.1.gz
/ucrt64/share/man/man1/samtools-fqidx.1.gz
/ucrt64/share/man/man1/samtools-head.1.gz
/ucrt64/share/man/man1/samtools-idxstats.1.gz
/ucrt64/share/man/man1/samtools-import.1.gz
/ucrt64/share/man/man1/samtools-index.1.gz
/ucrt64/share/man/man1/samtools-markdup.1.gz
/ucrt64/share/man/man1/samtools-merge.1.gz
/ucrt64/share/man/man1/samtools-mpileup.1.gz
/ucrt64/share/man/man1/samtools-phase.1.gz
/ucrt64/share/man/man1/samtools-quickcheck.1.gz
/ucrt64/share/man/man1/samtools-reference.1.gz
/ucrt64/share/man/man1/samtools-reheader.1.gz
/ucrt64/share/man/man1/samtools-reset.1.gz
/ucrt64/share/man/man1/samtools-rmdup.1.gz
/ucrt64/share/man/man1/samtools-samples.1.gz
/ucrt64/share/man/man1/samtools-sort.1.gz
/ucrt64/share/man/man1/samtools-split.1.gz
/ucrt64/share/man/man1/samtools-stats.1.gz
/ucrt64/share/man/man1/samtools-targetcut.1.gz
/ucrt64/share/man/man1/samtools-tview.1.gz
/ucrt64/share/man/man1/samtools-view.1.gz
/ucrt64/share/man/man1/samtools.1.gz
/ucrt64/share/man/man1/wgsim.1.gz